Mouse vs Ryukyu mouse Synteny results
The syntenic regions between Mouse (Mus musculus, GRCm39) and Ryukyu mouse (Mus caroli, CAROLI_EIJ_v1.1) were extracted from their pairwise alignment in Ensembl release 103. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 102 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Mouse |
Uncovered: 212,998,298 out of 2,728,222,451 |
Uncovered: 615,018 out of 36,555,494 |
| Ryukyu mouse |
Uncovered: 101,304,200 out of 2,553,112,587 |
Uncovered: 8,524 out of 32,770,133 |