Mouse vs Northern American deer mouse Synteny results
The syntenic regions between Mouse (Mus musculus, GRCm39) and Northern American deer mouse (Peromyscus maniculatus bairdii, HU_Pman_2.1) were extracted from their pairwise alignment in Ensembl release 103. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 333 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Mouse |
Uncovered: 254,718,290 out of 2,728,222,451 |
Uncovered: 1,226,696 out of 36,555,494 |
| Northern American deer mouse |
Uncovered: 119,267,779 out of 2,512,423,440 |
Uncovered: 758,830 out of 33,606,407 |