Japanese medaka HdrR vs Atlantic cod Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Atlantic cod (Gadus morhua, gadMor3.0) were extracted from their pairwise alignment in Ensembl release 103. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 435 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 274,985,177 out of 734,057,086 |
Uncovered: 15,389,427 out of 40,334,262 |
| Atlantic cod |
Uncovered: 257,805,775 out of 669,949,713 |
Uncovered: 15,662,708 out of 43,237,926 |