Human vs Sumatran orangutan Synteny results
The syntenic regions between Human (Homo sapiens, GRCh38) and Sumatran orangutan (Pongo abelii, Susie_PABv2) were extracted from their pairwise alignment in Ensembl release 105. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 233 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Human |
Uncovered: 272,215,836 out of 3,096,649,726 |
Uncovered: 386,889 out of 35,703,020 |
| Sumatran orangutan |
Uncovered: 234,818,107 out of 3,065,052,215 |
Uncovered: 259,531 out of 34,106,545 |