Dog vs Giant panda Synteny results
The syntenic regions between Dog (Canis lupus familiaris, ROS_Cfam_1.0) and Giant panda (Ailuropoda melanoleuca, ASM200744v2) were extracted from their pairwise alignment in Ensembl release 105. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 187 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Dog |
Uncovered: 62,726,240 out of 2,396,858,295 |
Uncovered: 436,191 out of 35,281,463 |
| Giant panda |
Uncovered: 147,250,875 out of 2,444,060,653 |
Uncovered: 1,441,084 out of 33,981,247 |