Japanese medaka HdrR vs Atlantic salmon Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Atlantic salmon (Salmo salar, Ssal_v3.1) were extracted from their pairwise alignment in Ensembl release 106. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 469 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 452,679,832 out of 734,057,086 |
Uncovered: 22,810,062 out of 40,334,262 |
| Atlantic salmon |
Uncovered: 2,335,151,597 out of 2,756,584,103 |
Uncovered: 65,958,341 out of 84,244,977 |