Chicken vs Zebra finch Synteny results
The syntenic regions between Chicken (Gallus gallus, bGalGal1.mat.broiler.GRCg7b) and Zebra finch (Taeniopygia guttata, bTaeGut1_v1.p) were extracted from their pairwise alignment in Ensembl release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 229 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Chicken |
Uncovered: 61,322,133 out of 1,053,332,251 |
Uncovered: 2,053,892 out of 31,304,036 |
| Zebra finch |
Uncovered: 44,009,567 out of 1,057,995,280 |
Uncovered: 2,907,604 out of 30,887,957 |