Chicken vs Collared flycatcher Synteny results
The syntenic regions between Chicken (Gallus gallus, bGalGal1.mat.broiler.GRCg7b) and Collared flycatcher (Ficedula albicollis, FicAlb1.5) were extracted from their pairwise alignment in Ensembl release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 265 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Chicken |
Uncovered: 68,701,538 out of 1,053,332,251 |
Uncovered: 2,710,836 out of 31,304,036 |
| Collared flycatcher |
Uncovered: 55,232,606 out of 1,118,343,587 |
Uncovered: 1,406,763 out of 27,372,082 |