Cow vs Vaquita Synteny results
The syntenic regions between Cow (Bos taurus, ARS-UCD1.3) and Vaquita (Phocoena sinus, mPhoSin1.pri) were extracted from their pairwise alignment in Ensembl release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 191 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Cow |
Uncovered: 119,927,360 out of 2,711,209,831 |
Uncovered: 750,791 out of 37,648,360 |
| Vaquita |
Uncovered: 21,384,174 out of 2,371,524,154 |
Uncovered: 118,202 out of 31,056,201 |