Cow vs Blue whale Synteny results
The syntenic regions between Cow (Bos taurus, ARS-UCD1.3) and Blue whale (Balaenoptera musculus, mBalMus1.v2) were extracted from their pairwise alignment in Ensembl release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 208 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Cow |
Uncovered: 118,935,254 out of 2,711,209,831 |
Uncovered: 659,339 out of 37,648,360 |
| Blue whale |
Uncovered: 28,526,478 out of 2,379,995,981 |
Uncovered: 164,872 out of 31,093,315 |