Japanese medaka HdrR vs Electric eel Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Electric eel (Electrophorus electricus, fEleEle1.pri) were extracted from their pairwise alignment in Ensembl release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 595 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 386,223,231 out of 734,057,086 |
Uncovered: 22,329,443 out of 40,334,262 |
| Electric eel |
Uncovered: 283,340,965 out of 589,358,956 |
Uncovered: 17,809,557 out of 37,408,676 |