23 pig breeds EPO-Extended
This alignment has been generated in Ensembl release 113 and is composed of 12,886 blocks (up to 825,076 bp long).
API access
| Species | Assembly | Genome length (bp) | Genome coverage (bp) | Genome coverage (%) | Coding exon length (bp) | Coding exon coverage (bp) | Coding exon coverage (%) |
|---|---|---|---|---|---|---|---|
| Horse (Equus caballus) | EquCab3.0 | 2,506,966,135 | 2,280,233,559 | 90.96 | 38,317,516 | 35,756,572 | 93.32 |
| Sheep (Ovis aries) | ARS-UI_Ramb_v2.0 | 2,628,146,905 | 2,513,401,530 | 95.63 | 36,241,706 | 34,891,847 | 96.28 |
| Cow (Bos taurus) | ARS-UCD1.3 | 2,711,209,831 | 2,536,766,968 | 93.57 | 37,648,360 | 35,982,026 | 95.57 |
| Pig (Sus scrofa) | Sscrofa11.1 | 2,501,912,388 | 2,359,910,672 | 94.32 | 35,448,596 | 33,837,410 | 95.45 |
| Pig - Meishan (Sus scrofa) | Meishan_pig_v1 | 2,467,495,771 | 2,304,267,909 | 93.38 | 34,405,547 | 33,195,377 | 96.48 |
| Pig - Bama miniature (Sus scrofa) | ASM764409v1 | 2,491,069,675 | 2,313,592,983 | 92.88 | 35,806,036 | 33,964,209 | 94.86 |
| Pig - Ningxiang (Sus scrofa domesticus) | ASM2056790v1 | 2,440,961,843 | 2,324,455,941 | 95.23 | 35,175,308 | 33,686,241 | 95.77 |
| Pig - Bamei (Sus scrofa) | Bamei_pig_v1 | 2,460,755,741 | 2,305,481,124 | 93.69 | 34,436,299 | 33,232,835 | 96.51 |
| Pig - Rongchang (Sus scrofa) | Rongchang_pig_v1 | 2,459,027,728 | 2,308,924,510 | 93.90 | 34,688,475 | 33,549,253 | 96.72 |
| Pig - Jinhua (Sus scrofa) | Jinhua_pig_v1 | 2,453,702,738 | 2,305,749,802 | 93.97 | 34,359,345 | 33,173,743 | 96.55 |
| Pig - Tibetan (Sus scrofa) | Tibetan_Pig_v2 | 2,437,742,524 | 2,250,286,461 | 92.31 | 33,242,148 | 31,703,785 | 95.37 |
| Pig - PB115 (Sus scrofa) | CAU-K | 2,444,985,074 | 2,319,043,530 | 94.85 | 35,284,272 | 33,674,519 | 95.44 |
| Pig - Berkshire (Sus scrofa) | Berkshire_pig_v1 | 2,434,706,773 | 2,303,585,459 | 94.61 | 34,511,197 | 33,300,048 | 96.49 |
| Pig - Landrace (Sus scrofa) | Landrace_pig_v1 | 2,440,981,886 | 2,307,837,901 | 94.55 | 34,646,469 | 33,428,589 | 96.48 |
| Pig USMARC (Sus scrofa) | USMARCv1.0 | 2,755,438,035 | 2,315,747,250 | 84.04 | 35,166,034 | 32,994,162 | 93.82 |
| Pig - Largewhite (Sus scrofa) | Large_White_v1 | 2,457,907,103 | 2,317,205,663 | 94.28 | 34,666,066 | 33,482,249 | 96.59 |
| Pig - Pietrain (Sus scrofa) | Pietrain_pig_v1 | 2,438,316,299 | 2,308,640,329 | 94.68 | 34,368,936 | 33,198,994 | 96.60 |
| Pig - euw1 (european wild boar) (Sus scrofa) | ASM2165605v1 | 2,457,990,317 | 2,323,674,148 | 94.54 | 32,847,998 | 31,485,422 | 95.85 |
| Pig - Hampshire (Sus scrofa) | Hampshire_pig_v1 | 2,437,109,612 | 2,311,723,262 | 94.86 | 34,573,096 | 33,340,102 | 96.43 |
| Pig - NIHS-2020 (Sus scrofa) | ASM1855540v1 | 2,598,860,052 | 2,330,545,350 | 89.68 | 36,548,658 | 34,339,183 | 93.95 |
| Pig - Ossabaw miniature (Sus scrofa) | ASM2471841v1 | 2,455,681,563 | 2,325,829,801 | 94.71 | 35,510,875 | 33,766,713 | 95.09 |
| Pig - Duroc (Sus scrofa) | Ninghe_Sus_1 | 2,458,257,385 | 2,332,786,552 | 94.90 | 31,082,983 | 30,233,231 | 97.27 |
| Pig - Wuzhishan (Sus scrofa) | minipig_v1.0 | 2,508,912,457 | 2,304,762,123 | 91.86 | 32,216,998 | 30,394,180 | 94.34 |
Block size distribution
| Size range | All 12,886 alignment blocks | |
|---|---|---|
| # blocks | Total size (incl. gaps) | |
| 10 bp - 100 bp | 1 |
44.0 bp |
| 100 bp - 1 kb | 19 |
9.6 kb |
| 1 kb - 10 kb | 249 |
1.4 Mb |
| 10 kb - 100 kb | 5,537 |
249.6 Mb |
| 100 kb - 1 Mb | 4,181 |
1.6 Gb |
| 1 Mb - 10 Mb | 2,899 |
2.9 Gb |