Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141464
2923639430.9210638.82.7
Bilateral animals (Bilateria)25
8372
21568334.92176122.31.5
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Chordates (Chordata)87
182175
5874442094.05192100.03.1
Ciona sea squirts (Ciona)3
6
222.0222.01.0
Ciona intestinalis12
34
252.8111.02.8
Ciona savignyi4
25
2186.2111.06.2
Vertebrates (Vertebrata)197
68058
25022345.5219184.84.3
Jawed vertebrates (Gnathostomata)169
81901
2922446484.611193102.32.6
Bony vertebrates (Euteleostomi)401
113803
26341283.8218076.86.3
Lobe-finned fish (Sarcopterygii)59
17289
21452293.0212167.56.6
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Tetrapods (Tetrapoda)52
12851
2398247.1212274.36.8
Amniotes (Amniota)277
67005
23200241.9211663.93.6
Reptiles and birds (Sauria)312
1438
23684.62123.31.4
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Mammals (Mammalia)23
5137
3435223.338962.43.5
Marsupials and Placental mammals (Theria)89
11675
2398131.229245.32.9
Placentals (Eutheria)11703
148097
2339712.72884.61.5
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Shrew (Sorex araneus)6
17
262.8111.02.8
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Human (Homo sapiens)62
148
282.4111.02.4
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Olive baboon (Papio anubis)2
5
232.5111.02.5
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Marsupials (Marsupialia)55
1153
239521.0243.15.5
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Bony fishes (Actinopterygii)5
581
2386116.226120.410.8
Ray-finned fishes (Neopterygii)9
2412
35398268.036426.427.8
Osteoglossocephalai8
2215
11387276.935125.425.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)510
22881
239844.92546.710.7
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Turbot (Scophthalmus maximus)37
10848
53390293.2111.0293.2
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Goldfish (Carassius auratus)5
1242
75362248.4111.0248.4
Zebrafish (Danio rerio)39
1187
238030.4111.030.4
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Denticle herring (Denticeps clupeoides reference strain)29
7776
26398268.1111.0268.1
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Lumpfish (Cyclopterus lumpus)3
385
2379128.3111.0128.3
Atlantic salmon (Salmo salar)632
3853
23856.1111.06.1
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Brown trout (Salmo trutta)4
14
273.5111.03.5
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)11
1279
2386116.3111.0116.3
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2390244.0111.0244.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4