Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141464
2923639430.9210638.82.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8372
21568334.92176122.31.5
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Chordates (Chordata)87
182175
5874442094.05192100.03.1
Ciona sea squirts (Ciona)3
6
222.0222.01.0
Ciona intestinalis12
34
252.8111.02.8
Ciona savignyi4
25
2186.2111.06.2
Vertebrates (Vertebrata)197
68058
25022345.5219184.84.3
Jawed vertebrates (Gnathostomata)169
81901
2922446484.611193102.32.6
Bony vertebrates (Euteleostomi)401
113803
26341283.8218076.86.3
Bony fishes (Actinopterygii)5
581
2386116.226120.410.8
Ray-finned fishes (Neopterygii)9
2412
35398268.036426.427.8
Osteoglossocephalai8
2215
11387276.935125.425.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)510
22881
239844.92546.710.7
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Atlantic salmon (Salmo salar)632
3853
23856.1111.06.1
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Turbot (Scophthalmus maximus)37
10848
53390293.2111.0293.2
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)11
1279
2386116.3111.0116.3
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Goldfish (Carassius auratus)5
1242
75362248.4111.0248.4
Denticle herring (Denticeps clupeoides reference strain)29
7776
26398268.1111.0268.1
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2390244.0111.0244.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Lumpfish (Cyclopterus lumpus)3
385
2379128.3111.0128.3
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Zebrafish (Danio rerio)39
1187
238030.4111.030.4
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)59
17289
21452293.0212167.56.6
Tetrapods (Tetrapoda)52
12851
2398247.1212274.36.8
Amniotes (Amniota)277
67005
23200241.9211663.93.6
Mammals (Mammalia)23
5137
3435223.338962.43.5
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Marsupials and Placental mammals (Theria)89
11675
2398131.229245.32.9
Marsupials (Marsupialia)55
1153
239521.0243.15.5
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia5
10
222.0222.01.0
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Placentals (Eutheria)11703
148097
2339712.72884.61.5
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Macaque (Macaca mulatta)1
2
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Hyrax (Procavia capensis)16
51
273.2111.03.2
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Human (Homo sapiens)62
148
282.4111.02.4
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Shrew (Sorex araneus)6
17
262.8111.02.8
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Elephant (Loxodonta africana)6
20
263.3111.03.3
Pika (Ochotona princeps)65
150
272.3111.02.3
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Reptiles and birds (Sauria)312
1438
23684.62123.31.4
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3