Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Mammals (Mammalia)21
5121
3435243.938960.94.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Human (Homo sapiens)61
146
282.4111.02.4
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Microbat (Myotis lucifugus)8
20
252.5111.02.5
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Degu (Octodon degus)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Macaque (Macaca mulatta)1
2
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Osteoglossocephalai10
2688
11379268.835126.524.7
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Huchen (Hucho hucho)1
2
222.0111.02.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Brown trout (Salmo trutta)4
14
273.5111.03.5
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4