Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141464
2923639430.9210638.82.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8372
21568334.92176122.31.5
Chordates (Chordata)87
182175
5874442094.05192100.03.1
Ciona sea squirts (Ciona)3
6
222.0222.01.0
Ciona intestinalis12
34
252.8111.02.8
Ciona savignyi4
25
2186.2111.06.2
Vertebrates (Vertebrata)197
68058
25022345.5219184.84.3
Jawed vertebrates (Gnathostomata)169
81901
2922446484.611193102.32.6
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Bony vertebrates (Euteleostomi)401
113803
26341283.8218076.86.3
Bony fishes (Actinopterygii)5
581
2386116.226120.410.8
Ray-finned fishes (Neopterygii)9
2412
35398268.036426.427.8
Osteoglossocephalai8
2215
11387276.935125.425.0
Teleost fishes (Clupeocephala)510
22881
239844.92546.710.7
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Turbot (Scophthalmus maximus)37
10848
53390293.2111.0293.2
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Lumpfish (Cyclopterus lumpus)3
385
2379128.3111.0128.3
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)11
1279
2386116.3111.0116.3
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Zebrafish (Danio rerio)39
1187
238030.4111.030.4
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Goldfish (Carassius auratus)5
1242
75362248.4111.0248.4
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Denticle herring (Denticeps clupeoides reference strain)29
7776
26398268.1111.0268.1
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Atlantic salmon (Salmo salar)632
3853
23856.1111.06.1
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Rainbow trout (Oncorhynchus mykiss)32
7808
2390244.0111.0244.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)59
17289
21452293.0212167.56.6
Tetrapods (Tetrapoda)52
12851
2398247.1212274.36.8
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Amniotes (Amniota)277
67005
23200241.9211663.93.6
Reptiles and birds (Sauria)312
1438
23684.62123.31.4
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Indian cobra (Naja naja)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Mammals (Mammalia)23
5137
3435223.338962.43.5
Marsupials and Placental mammals (Theria)89
11675
2398131.229245.32.9
Placentals (Eutheria)11703
148097
2339712.72884.61.5
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Macaque (Macaca mulatta)1
2
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Human (Homo sapiens)62
148
282.4111.02.4
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Marsupials (Marsupialia)55
1153
239521.0243.15.5
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7