Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
89685
2549375979.028428.66.1
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)23
6273
21073272.72168108.91.6
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Chordates (Chordata)76
130176
5671961712.8317489.83.5
Ciona sea squirts (Ciona)5
65
25113.0222.06.5
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Vertebrates (Vertebrata)160
50637
23540316.5218177.27.0
Lamprey (Petromyzon marinus)14
456
238832.6111.032.6
Jawed vertebrates (Gnathostomata)141
52638
2012205373.37186100.82.9
Bony vertebrates (Euteleostomi)261
68777
26205263.5217967.67.6
Lobe-finned fish (Sarcopterygii)42
9717
2772231.4210343.38.9
Coelacanth (Latimeria chalumnae)5
1101
2322220.2111.0220.2
Tetrapods (Tetrapoda)32
6368
2395199.0211968.25.8
Tropical clawed frog (Xenopus tropicalis)7
338
224048.3111.048.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)167
33570
22556201.0210846.74.7
Reptiles and birds (Sauria)310
1049
2123.42123.31.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Australian saltwater crocodile (Crocodylus porosus)1
262
262262262.0111.0262.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Mammals (Mammalia)11
1628
3359148.038754.12.7
Marsupials and Placental mammals (Theria)84
10816
2399128.828935.95.6
Marsupials (Marsupialia)55
830
237915.1243.14.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Diprotodontia6
31
2215.2222.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Placentals (Eutheria)11519
101342
217738.82884.11.3
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Chinese hamster CHOK1GS (Cricetulus griseus CHOK1GS_HDv1)1
2
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Degu (Octodon degus)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Human (Homo sapiens)61
146
282.4111.02.4
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Cattle (Bos taurus reference breed)11
30
262.7111.02.7
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Sperm whale (Physeter catodon)3
7
232.3111.02.3
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Guinea Pig (Cavia porcellus)1
395
395395395.0111.0395.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Leopard (Panthera pardus)1
330
330330330.0111.0330.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Domestic cat (Felis catus reference strain)1
3
333.0111.03.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
White-tufted-ear marmoset (Callithrix jacchus)13
34
292.6111.02.6
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Platypus (Ornithorhynchus anatinus)25
5797
2397231.9111.0231.9
Bony fishes (Actinopterygii)3
378
2370126.023915.33.9
Ray-finned fishes (Neopterygii)9
1445
3399160.624416.814.2
Spotted gar (Lepisosteus oculatus)7
1473
2385210.4111.0210.4
Osteoglossocephalai7
2061
9395294.463820.014.8
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)503
21780
239643.32366.411.8
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Goldfish (Carassius auratus)5
1413
127384282.6111.0282.6
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1059
2396105.9111.0105.9
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Zebrafish (Danio rerio)39
1585
239340.6111.040.6
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Northern pike (Esox lucius reference strain)3
510
47377170.0111.0170.0
Channel bull blenny (Cottoperca gobio)3
540
2376180.0111.0180.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Lumpfish (Cyclopterus lumpus)3
373
2367124.3111.0124.3
Rainbow trout (Oncorhynchus mykiss)34
7841
2359230.6111.0230.6
Denticle herring (Denticeps clupeoides reference strain)31
7232
29393233.3111.0233.3
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Atlantic cod (Gadus morhua)19
854
233744.9111.044.9
Brown trout (Salmo trutta)5
396
238279.2111.079.2
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Turbot (Scophthalmus maximus)37
10782
19396291.4111.0291.4
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Atlantic salmon (Salmo salar)632
3892
23806.2111.06.2
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0